PhaME: Phylogenetics and Molecular Evolution analysis tool

Phylogenetic and Molecular Evolution (PhaME) analysis tool allows suite of analysis pertaining to phylogeny and moleuclar evolution.

INTRODUCTION

• Introduction
  • What is PhaME?
  • PhaME: Under the hood
• How to run PhaME?
  • What is in control file?
  • What do parameters in control file stand for?
  • What output files are produced?

INSTALL

• Conda
• Docker
• Web-interface.
  • Phame App
  • Step by step guide to running PhaME using a web interface on a local machine.
  • Step by step guide to running PhaME using a web interface on a production machine.
  • Monitoring tasks
  • Email notifications

USAGE

• Use Cases
  • With only complete genomes
  • With complete genomes and contigs
  • With raw reads, complete genomes, and contigs
  • Zoom-in analysis